Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs72661643 chr1:36451599 A/G 2.54E-11 513 21.3 29.17 3.73 KM Plot
HNSC rs72661644 chr1:36453894 G/A 2.54E-11 513 21.3 29.17 3.73 KM Plot
HNSC rs72661646 chr1:36454954 A/T 2.54E-11 513 21.3 29.17 3.73 KM Plot
HNSC rs72901297 chr1:36184589 C/T 9.55E-15 508 21.42 27.03 3.02 KM Plot
HNSC rs73177058 chr22:46668079 G/T 2.28E-5 514 21.78 23.1 11.7 KM Plot
HNSC rs74177686 chr2:99918077 A/G 3.17E-6 508 7.17 20.48 22.5 KM Plot
HNSC rs7438763 chr4:110763413 A/G 2.75E-5 504 16.63 23.93 22.33 KM Plot
HNSC rs74403501 chr21:48080388 C/G 5.16E-9 511 21.52 21.02 2.73 KM Plot
HNSC rs74540991 chr21:48091262 C/G 5.16E-9 511 21.52 21.02 2.73 KM Plot
HNSC rs74671132 chr21:47963485 T/C 3.48E-8 512 21.33 22.9 2.87 KM Plot
HNSC rs74869222 chr21:48078212 G/C 4.71E-9 513 21.52 21.02 2.73 KM Plot
HNSC rs74879824 chr1:36413117 T/A 3.09E-11 512 21.3 28.3 3.73 KM Plot
HNSC rs74890552 chr2:108545075 T/C 0 507 21.5 21.37 0.47 KM Plot
HNSC rs75008248 chr21:48082887 C/G 5.16E-9 511 21.52 21.02 2.73 KM Plot
HNSC rs7513945 chr1:26583681 T/C 1.75E-5 515 6.8 20.58 22.1 KM Plot